Book Chapters Journals Conference Proceedings Source Code Repositories Invited Speaker Communications Thesis Marie-Jean Meurs

Book Chapters


» Hafedh Mili, Imen Benzarti, Marie-Jean Meurs, Abdellatif Obaid, Javier Gonzalez-Huerta, Narjes Haj-Salem, Anis Boubaker
"Context Aware Customer Experience Management: A Development Framework Based on Ontologies and Computational Intelligence", Sentiment Analysis and Ontology Engineering: An Environment of Computational Intelligence Volume 639 of the series Studies in Computational Intelligence pp 273-311 2016 doi: 10.1007/978-3-319-30319-2_1223 March 2016 (pdf) (bib)

Refereed Journal Articles


» Hayda Almeida, Ludovic Jean-Louis, Marie-Jean Meurs
"An open source and modular search engine for biomedical literature retrieval", Computational Intelligence. July 2017 doi: 10.1111/coin.12125 (pdf) (bib)

» Hayda Almeida, Marie-Jean Meurs, Leila Kosseim, Adrian Tsang
"Data Sampling and Supervised Learning for HIV Literature Screening", IEEE Transactions on NanoBioscience, Vol. 15 Issue 4. June 2016 doi: 10.1109/TNB.2016.2565481 (pdf) (bib)

» Kimchi Strasser, Erin McDonnell, Carol Nyaga, Min Wu, Sherry Wu, Hayda Almeida, Marie-Jean Meurs, Leila Kosseim, Justin Powlowski, Greg Butler, Adrian Tsang
"mycoCLAP, the Database for Characterized Lignocellulose-Active Proteins of Fungal Origin: Resource and Text Mining Curation Support", DATABASE 2015. 16 January 2015 (pdf) (bib) (PMID: 25754864)

» Hayda Almeida, Marie-Jean Meurs, Leila Kosseim, Greg Butler, Adrian Tsang
"Machine Learning for Biomedical Triage", PLOS ONE 9(12): e115892. 2014 doi: 10.1371/journal.pone.0115892.31 December 2014 (pdf) (bib) (PMID: 25551575)

» Eric Charton, Marie-Jean Meurs, Ludovic Jean-Louis, Michel Gagnon
"Using Collaborative Tagging for Text Classification: From Text Classification to Opinion Mining", Informatics 2014, 1, 32-51. 28 November 2013 (pdf) (bib)

» Marie-Jean Meurs, Caitlin Murphy, Ingo Morgenstern, Greg Butler, Justin Powlowski, Adrian Tsang and René Witte
"Semantic Text Mining Support for Lignocellulose Research", BMC Medical Informatics and Decision Making, Vol.12 Suppl.1 2012 30 April 2012 (html) (pdf) (bib) (PMID:2595090)

» Mohamed Didi Biha and Marie-Jean Meurs
"An Exact Algorithm for Solving the Vertex Separator Problem", Journal of Global Optimization, Volume 49, Number 3, March 2011 (pdf) (bib)

» Marie-Jean Meurs, Fabrice Lefèvre, Renato De Mori
"Approche bayésienne de la composition sémantique dans les systèmes de dialogue oral", ISI, Volume 15, Number 2 - pp.49-71 - 2010 (pdf) (bib)


Conference Proceedings


2017


» Hayda Almeida, Antoine Briand, Marie-Jean Meurs
"Detecting Early Risk of Depression from Social Media User-generated Content", eRisk - CLEF 2017, Dublin, Ireland, September 11 - 14, 2017

» Hayda Almeida, Antoine Briand, Marie-Jean Meurs
"Predicting Depression from User-generated Content in Social Media", WiNLP Workshop at ACL 2017, Vancouver, BC, Canada, July 30 - August 4, 2017

» Marc Sarfati, Marc Queudot, Catherine Mancel, Marie-Jean Meurs
"Knowledge Discovery in Graphs Through Vertex Separation", The 30th Canadian Conference on Artificial Intelligence, Springer, pp. 203-214. Edmonton, AB, Canada, May 16 - 19, 2017

» Hayda Almeida, Marc Queudot, Leila Kosseim, Marie-Jean Meurs
"Supervised Methods to Support Online Scientific Data Triage", International Conference on E-Technologies, MCETECH 2017, Springer, pp. 213-221. Ottawa, ON, Canada, May 17 - 19, 2017

» Marc Sarfati, Marc Queudot, Catherine Mancel, Marie-Jean Meurs
"Formulation relaxée de la séparation équilibrée d'un graphe", Congrès annuel de la Société Française de Recherche Opérationnelle et d'Aide à la Décision, ROADEF 2017, Metz, France, February 22 - 24 2017

2016


» Hayda Almeida, Marc Queudot, Marie-Jean Meurs
"Automatic Triage of Mental Health Online Forum Posts", Computational Linguistics and Clinical Psychology Workshop at NAACL HLT 2016, San Diego, CA, USA, June 16 2016 (pdf) (bib)

» Hayda Almeida, Ludovic Jean-Louis, Marie-Jean Meurs
"Mining Biomedical Literature: An Open Source and Modular Approach", The 29th Canadian Conference on Artificial Intelligence, Victoria, BC, Canada, May 31 - June 3, 2016 (pdf) (bib)

» Marie-Jean Meurs, Hayda Almeida, Ludovic Jean-Louis, Eric Charton
"SemLinker, a Modular and Open Source Framework for Named Entity Discovery and Linking", LREC 2016, Portoroz, Slovenia, May 23-28, 2016 (pdf) (bib)

» Marie-Jean Meurs, Hayda Almeida, Leila Kosseim, Adrian Tsang
"Développement d'une base documentaire sur le VIH : l'intelligence artificielle au service de la recherche biomédicale.", Congrès de l'ACFAS 2016, Montreal, QC, Canada, May 9-13, 2016 (présentation)

» Eric Charton, Nizar Ghoula, Marie-Jean Meurs
"Open Data for Local Search: Challenges and Perspectives", WWW OD4LS, Workshop in conjunction with WWW2016, the International World Wide Web Conference, Montreal, QC, Canada, April 11-15, 2016 (pdf) (bib)

» Hayda Almeida, Ludovic Jean-Louis, Marie-Jean Meurs
"Retrieving Biomedical Literature: An Open Source Search Engine Based on Open Access Resources", Biocuration 2016, The Conference of the International Society for Biocuration, Geneva, Switzerland, April 10-14, 2016 (abstract) (talk) (poster)

2015


» Hayda Almeida, Marie-Jean Meurs, Leila Kosseim, Adrian Tsang
"Supporting HIV Literature Screening with Data Sampling and Supervised Learning", IEEE BIBM 2015, The IEEE International Conference on Bioinformatics and Biomedicine, Washington DC, USA, November 9-12, 2015 (online version) (authors' version) (bib)

» Hayda Almeida, Marie-Jean Meurs, Leila Kosseim, Greg Butler, Adrian Tsang
"Data Undersampling for Scientific Literature Triage", HPCS 2015, The High Performance Computing Symposium, Montreal, QC, Canada, June 15-19, 2015

» Kimchi Strasser, Erin McDonnell, Carol Nyaga, Min Wu, Sherry Wu, Hayda Almeida, Marie-Jean Meurs, Leila Kosseim, Justin Powlowski, Greg Butler, Adrian Tsang
"mycoCLAP, the Database for Characterized Lignocellulose-Active Proteins of Fungal Origin", Biocuration 2015, The Conference of the International Society for Biocuration, Beijing, China, April 23-26, 2015

2014


» Eric Charton, Marie-Jean Meurs, Ludovic Jean-Louis, Michel Gagnon
"Mutual Desambiguation for Entity Linking", ACL 2014, The 52nd Annual Meeting of the Association for Computational Linguistics, Baltimore, MD, USA, June 22-27, 2014 (pdf) (bib)

» Eric Charton, Marie-Jean Meurs, Ludovic Jean-Louis, Michel Gagnon
"Improving Entity Linking Using Surface Form Refinement.", LREC 2014, Reikjavik, Iceland, May 26-31, 2014 (pdf) (talk) (bib)

» Marie-Jean Meurs, Hayda Almeida, Ludovic Jean-Louis, Eric Charton
"SemLinker Entity Discovery and Linking System at KBP2014", Text Analysis Conference 2014 - KBP, National Institute of Standards and Technology, Gaithersburg, Maryland USA, November 17-18, 2014

» Hayda Almeida, Marie-Jean Meurs, Leila Kosseim, Greg Butler, Adrian Tsang
"Biomedical Literature Triage using Supervised Learning", NIPS 2014 - ML4CHG, 2nd Workshop on Machine Learning for Clinical Data Analysis, Healthcare and Genomics, Montreal, Canada, December 12, 2014 (pdf) (poster) (bib)

» Hayda Almeida, Marie-Jean Meurs, Leila Kosseim, Greg Butler, Adrian Tsang
"A Machine Learning Approach for mycoCLAP Triage", Biocuration 2014, The Conference of the International Society for Biocuration, Toronto, ON, Canada, April 6-9, 2014 (poster)

» Emmet O'Brien, Marie-Jean Meurs, Thi Truc Minh Nguyen, Quy Vo, Greg Butler, Adrian Tsang
"Correlation Between Translation Speed and Structural Properties of Genes in Aspergillus niger", Biocuration 2014, The Conference of the International Society for Biocuration, Toronto, ON, Canada, April 6-9, 2014

» David H. Mason, Marie-Jean Meurs, Carol Nyaga, Erin McDonnell, Ingo Morgenstern, Greg Butler, Adrian Tsang
"Human-Computer Collaborative Annotation with Proxiris", Biocuration 2014, The Conference of the International Society for Biocuration, Toronto, ON, Canada, April 6-9, 2014

» David H. Mason, Marie-Jean Meurs, Erin McDonnell, Ingo Morgenstern, Carol Nyaga, Vahé Chahinian, Greg Butler and Adrian Tsang
"Multi-Domain Collaboration for Web-Based Literature Browsing and Curation", ISCB CSHALS2014, Boston, MA, USA, February 26-28, 2014 (pdf) (bib)

2013


» Eric Charton, Marie-Jean Meurs, Ludovic Jean-Louis, Michel Gagnon
"SemLinker system for KBP2013: A disambiguation algorithm based on mutual relations of semantic annotations inside a document.", Text Analysis Conference 2013 - KBP, National Institute of Standards and Technology, Gaithersburg, Maryland USA, November 18-19, 2013 (pdf) (poster) (bib)

» Vahé Chahinian, Marie-Jean Meurs, David H. Mason, Erin McDonnell, Ingo Morgenstern, Greg Butler and Adrian Tsang
"Proxiris, an augmented browsing tool for literature curation", DILS 2013, 9th International Conference on Data Integration in the Life Sciences, Montreal, QC, Canada, July 11-12, 2013 (abstract) (pdf) (bib)

» Eric Charton, Ludovic Jean-Louis, Marie Jean Meurs, Michel Gagnon
" Trois recettes d'apprentissage automatique pour un système d'extraction d'information et de classification de recettes de cuisine.", Campagne d'évaluation DeFT 2013, TALN2013, les Sables d'Olonne, France, 2013 (pdf) (bib) (actes) * Équipe gagnante / Winning team * Classement des systèmes proposés / Rank of proposed systems : task1 - 1/6, task2 - 2/5, task4 - 2/5

» Marie-Jean Meurs, Erin McDonnell, Ingo Morgenstern, Greg Butler, Justin Powlowski and Adrian Tsang
"Supporting Triage of PubMed Abstracts for mycoCLAP", Biocuration 2013, The Conference of the International Society for Biocuration, Cambridge, UK, April 7-10, 2013 (abstract) (poster) (bib)

» Vahé Chahinian, Marie-Jean Meurs, Erin McDonnell, Ingo Morgenstern, Greg Butler and Adrian Tsang
"Proxiris, a Browser Companion for Biocurators of Fungal Genomics Literature", Biocuration 2013, The Conference of the International Society for Biocuration, Cambridge, UK, April 7-10, 2013 (abstract) (poster) (bib)

» Fedor Bakalov, Marie-Jean Meurs, Birgitta König-Ries, Bahar Sateli, René Witte, Gregory Butler and Adrian Tsang
"An Approach to Controlling User Models and Personalization Effects in Recommender Systems", ACM IUI 2013, The ACM International Conference on Intelligent User Interfaces, Santa Monica, CA, USA, March 19-22, 2013 (online version) (pdf) (bib)

2012


» Fedor Bakalov, Marie-Jean Meurs, Birgitta König-Ries, Bahar Sateli, René Witte, Gregory Butler and Adrian Tsang
"Empowering Web Portal Users with Personalized Text Mining Services", EMBnet.journal, Vol.18, Suppl.B, NETTAB 2012, Wokshop on Network Tools and Applications in Biology focused on Integrated Bio-Search, Como, Italy, November 14-16, 2012 (poster)
Best poster award

» Bahar Sateli, Marie-Jean Meurs, Gregory Butler, Justin Powlowski, Adrian Tsang and René Witte
"IntelliGenWiki: An Intelligent Semantic Wiki for Life Sciences", EMBnet.journal, Vol.18, Suppl.B, NETTAB 2012, Wokshop on Network Tools and Applications in Biology focused on Integrated Bio-Search, Como, Italy, November 14-16, 2012

» Fedor Bakalov, Marie-Jean Meurs, Birgitta König-Ries, Bahar Sateli, René Witte, Greg Butler and Adrian Tsang
"Personalized Semantic Assistance for the Curation of Biochemical Literature", IEEE BIBM 2012, The IEEE International Conference on Bioinformatics and Biomedicine, Philadelphia, PA, USA, October 4-7, 2012 (online version) (authors' version) (bib) (talk)

» Fedor Bakalov, Bahar Sateli, René Witte, Marie-Jean Meurs and Birgitta König-Ries
"Natural Language Processing for Semantic Assistance in Web Portals", IEEE ICSC 2012, Sixth IEEE International Conference on Semantic Computing, Palermo, Italy, September 19-21, 2012 (online version) (authors' version) (bib)

» Bahar Sateli, Caitlin Murphy, René Witte, Marie-Jean Meurs and Adrian Tsang
"Text Mining Assistants in Wikis for Biocuration", Biocuration 2012, The Conference of the International Society for Biocuration, Washington DC, USA, April 2-4, 2012 (abstract) (poster) (bib)

» Marie-Jean Meurs, Bahar Sateli, Caitlin Murphy, René Witte, Greg Butler, Justin Powlowski and Adrian Tsang,
"mycoMINE : un système de fouille de texte sémantique dédié à la recherche de biocarburants de seconde génération", Congrès ACFAS 2012, Montréal, QC, Canada, 2012 (abstract) (jpg poster) (pdf poster)

2011


» Marie-Jean Meurs, Caitlin Murphy, Ingo Morgenstern, Nona Naderi, Greg Butler, Justin Powlowski, Adrian Tsang and René Witte,
"Semantic Text Mining for Lignocellulose Research", ACM DTMBIO2011, Glasgow, UK, October 24, 2011 (pdf) (bib) (talk)

» Marie-Jean Meurs, Caitlin Murphy, Nona Naderi, Ingo Morgenstern, Carolina Cantu, Shary Semarjit, Greg Butler, Justin Powlowski, Adrian Tsang and René Witte,
"Towards Evaluating the Impact of Semantic Support for Curating the Fungus Scientific Literature", CSWS2011, Vancouver, BC, Canada, August 5, 2011 (pdf) (bib)

2010


» Marie-Jean Meurs, Fabrice Lefèvre,
"Processus de décision à base de SVM pour la composition d'arbres de frames sémantiques", TALN 2010, Montréal, QC, Canada, 2010 (pdf) (bib)

2009


» Marie-Jean Meurs, Fabrice Lefèvre, Renato De Mori,
"Learning Bayesian Networks for Semantic Frame Composition in a Spoken Dialog System", NAACL-HLT 2009, Boulder, Colorado, USA, 2009 (pdf) (bib)

» Marie-Jean Meurs, Fabrice Lefèvre, Renato De Mori,
"Spoken Language Interpretation: On the Use of Dynamic Bayesian Networks for Semantic Composition", IEEE ICASSP 2009, Taipei, Taiwan, 2009 (pdf) (bib)

2008


» Marie-Jean Meurs, Fabrice Lefèvre, Renato De Mori,
"A Bayesian approach to semantic composition for spoken language interpretation", InterSpeech 2008, Brisbane, Australie, 2008 (pdf) (bib)

» Marie-Jean Meurs, Frédéric Duvert, Frédéric Béchet, Fabrice Lefèvre, Renato De Mori,
"Semantic Frame Annotation on the French MEDIA corpus", LREC 2008, Marrakech, Maroc, 2008 (pdf) (bib)

» Marie-Jean Meurs, Frédéric Duvert, Fabrice Lefèvre, Renato De Mori,
"Markov Logic Networks for Spoken Language Interpretation", IIS 2008, Zakopane, Pologne 2008 (pdf) (bib)

» Frédéric Duvert, Marie-Jean Meurs, Christophe Servan, Frédéric Béchet, Fabrice Lefèvre, Renato De Mori,
"Semantic composition process in a spoken understanding system", IIS 2008, Zakopane, Pologne, 2008 (pdf) (bib)

» Marie-Jean Meurs, Eric SanJuan,
"Combining Optimal and Atomic Decomposition of Terminology Association graphs", MLG 2008 Helsinki, Finlande, 2008 (pdf) (bib)

» Frédéric Duvert, Marie-Jean Meurs, Christophe Servan, Frédéric Béchet, Fabrice Lefèvre, Renato De Mori,
"Semantic composition process in a speech understanding system", IEEE ICASSP 2008, Las Vegas, USA, 2008 (pdf) (bib)

» Marie-Jean Meurs, Fabrice Lefèvre, Renato De Mori,
"Interprétation du dialogue oral : pour une approche bayésienne de la composition sémantique.", MajecSTIC 2008, Marseille, France, 2008 (pdf) (bib)
Best paper award

» Marie-Jean Meurs, Frédéric Duvert, Frédéric Béchet, Fabrice Lefèvre, Renato De Mori,
"Annotation en Frames Sémantiques du corpus de dialogue MEDIA", TALN 2008, Avignon, France, 2008 (pdf) (bib)

» Frédéric Duvert, Marie-Jean Meurs, Christophe Servan, Frédéric Béchet, Fabrice Lefèvre and Renato De Mori,
"Composition sémantique pour la compréhension de la parole dans le cadre de dialogue", JEP 2008, Avignon, France, 2008 (pdf) (bib)

2007


» Mohamed Didi Biha, Bangaly Kaba, Marie-Jean Meurs, Eric SanJuan,
"Graph decomposition approaches for terminology graphs", MICAI 2007, Aguascalientes, Mexique, Springer LNCS, Volume 4827/2007, pages 883-893, 2007 (Acceptance rate: 25%) (pdf) (bib)

Source Code Repositories

» Tsang Lab repository

» Google Code profile

» Git Hub profile

Invited Speaker

» Éric Charton, Ludovic Jean-Louis, Marie-Jean Meurs,
"Participation au DéFI fouille de texte DEFT2013: trois recettes d'apprentissage automatique pour un système d'extraction d'information et de classification de recettes de cuisine.", Séminaire du RALI, Université de Montréal, QC, Canada 2013

» Marie-Jean Meurs,
" Approche bayésienne de la composition sémantique dans les systèmes de dialogue oral.", Séminaire du LATL, Université de Genève, Suisse 2010

» Marie-Jean Meurs,
"Utilisation des réseaux bayésiens dynamiques pour la composition sémantique dans les systèmes de dialogue.", Séminaire du RALI, Université de Montréal, QC, Canada 2009

Communications

» Marie-Jean Meurs, Mohamed Didi Biha,
"Polyhedral Approach for the Vertex Separator Problem", The International Conference of NonConvex Programming, Rouen, France, 2007 (pdf) (bib)

» Marie-Jean Meurs, Mohamed Didi Biha,
"Approche polyédrale pour le problème du séparateur", FRANCORO V / ROADEF, Grenoble, France, 2007 (pdf) (bib)

Thesis

» Marie-Jean Meurs,
" Approche stochastique bayésienne de la composition sémantique pour les modules de compréhension automatique de la parole dans les systèmes de dialogue homme-machine.", LIA, PhD Thesis (Manuscrit de Thèse), 2009 (pdf)

» Marie-Jean Meurs,
"Approche polyédrale pour le problème du séparateur", LIA, Master Thesis (Mémoire de Master Recherche), 2006 (pdf) (bib)